The UCSC Genome Browser Introduction
Tutorial and training materials by OpenHelix
|Learn to use the UCSC Genome Browser with this free tutorial, sponsored by UCSC Genome Bioinformatics Group. The UCSC Genome Browser provides a way to examine the data from many genomes, with extensive annotation tracks for various data types including known genes, predicted genes, SNPs, comparative multi-species analysis and much more. This introductory tutorial focuses on the foundation and framework for the organization and display of the data, and basic text and sequence searches. This tutorial, which is the first in a series of three tutorials on the UCSC Genome Browser, will get you on your way to expertly navigating this vital tool for genomic research.|
- to perform basic text searches on the UCSC Genome Browser
- to understand and customize the displays in genomic regions of interest
- to access additional details and sequence data
- to start with a sequence and find genomic regions of interest using BLAT
This tutorial is a part of the tutorial group Genome Browsers. You might find the other tutorials in the group interesting:
This tutorial is a part of the tutorial group UCSC Tutorials. You might find the other tutorials in the group interesting:
Recent BioMed Central research articles citing this resource
Chen Ting-Wen et al., ChIPseek, a web-based analysis tool for ChIP data Transcriptomic methods. BMC Genomics (2014) doi:10.1186/1471-2164-15-539
González-Aguilera Cristina et al., Genome-wide analysis links emerin to neuromuscular junction activity in Caenorhabditis elegans. Genome Biology (2014) doi:10.1186/gb-2014-15-2-r21
Sheng Wei et al., Association of promoter methylation statuses of congenital heart defect candidate genes with Tetralogy of Fallot -No section-. Journal of Translational Medicine (2014) doi:10.1186/1479-5876-12-31
Velasco Guillaume et al., Germline genes hypomethylation and expression define a molecular signature in peripheral blood of ICF patients: implications for diagnosis and etiology. Orphanet Journal of Rare Diseases (2014) doi:10.1186/1750-1172-9-56
Christofolini M Denise et al., Complex small supernumerary marker chromosome with a 15q/16p duplication: clinical implications. Molecular Cytogenetics (2014) doi:10.1186/1755-8166-7-29
More about the resource:
The UCSC Genome Browser, sometimes referred to as the "Golden Path" browser, offers a well-organized and user-friendly view of the human genome, along with dozens of other genomes as well. The official genomic sequence is supplemented with many other data types which are useful to researchers: expression, variation, comparative genomics, and many more. The data can be accessed with simple text or sequence searches using BLAT, or probed in depth with customized queries. Be sure to see the other UCSC tutorials for advanced topics and additional tools as well.
The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.