Learn to use the UCSC Genome Browser with this free tutorial, sponsored by UCSC Genome Bioinformatics Group. The UCSC Genome Browser provides a way to examine the data from many genomes, with extensive annotation tracks for various data types including known genes, predicted genes, SNPs, comparative multi-species analysis and much more. This introductory tutorial focuses on the foundation and framework for the organization and display of the data, and basic text and sequence searches. This tutorial, which is the first in a series of three tutorials on the UCSC Genome Browser, will get you on your way to expertly navigating this vital tool for genomic research.
You will learn:
This tutorial is a part of the tutorial group UCSC Tutorials. You might find the other tutorials in the group interesting:
ENCODE Foundations: ENCyclopedia of DNA Elements
UCSC Genome Browser: The Additional Tools: Additional tools at the UCSC Genome Browser
UCSC Genome Browser: Custom Tracks and Table Browser: UCSC Genome Browser advanced topics
UCSC Archaeal Genome Browser: Provides you with many research and analysis tools that can be used to examine the genomes of more than 50 microbial species from the domain archaea.
ENCODE Data at UCSC: ENCODE Data at UCSC
Algorithms and Analysis : This category contains various tools that may help perform analysis of different genomics data types. This may include sequence alignment, large-scale or complex queries, motif finding, or comparative assessments.
Genome Databases (euk) : Genomic databases or repositories primarily aimed at eukaryotic organisms. Some may contain prokaryotic data as well.
Video Tip of the Week: ClinGen, The Clinical Genome Resource: The sequence data tsunami begins to crash into the shore, at the feet of clinicians and patients who want answers and treatment directions. But sometimes the tsunami is washing in debris. As the amount...
Video Tip of the Week: TargetMine, Data Warehouse for Drug Discovery: Browsing around genomic regions, layering on lots of associated data, and beginning to explore new data types I might come across are things that really fire up my brain. For me, visualization is key t...
Video Tip of the Week: Viewing Amino Acid info in the UCSC Genome Browser: We've been doing training on the UCSC Genome Browser for over 10 years now. We've seen it grow from just a few genomes and a few tracks to the enormous trove of information it is today. In fact, one of...
Customizing Your Digital Research Environment with Genome Browsers, #BioIT15: Every time we do a workshop on genome browser tools and other associated resources, we find that there's someone who's shocked to discover how much they didn't realize was underneath the interface. One...
Video Tip of the Week: The New OpenHelix Interface: Generally we like to highlight new features and new tools from bioinformatics software providers. But this week we wanted to introduce some new features of our own OpenHelix site. If you've been using ...
Recent BioMed Central research articles citing this resource
Tang Haibao et al., ALLMAPS: robust scaffold ordering based on multiple maps. Genome Biology (2015) doi:10.1186/s13059-014-0573-1
Gerek Z Nevin et al., Evolutionary Diagnosis of non-synonymous variants involved in differential drug response Selected articles from the 2nd International Genomic Medicine Conference (IGMC 2013): Medical Genomics 2nd International Genomic Medicine Conference (IGMC 2013). BMC Medical Genomics (2015) doi:10.1186/1755-8794-8-S1-S6
Wu Xiaowei et al., Nonparametric Bayesian clustering to detect bipolar methylated genomic loci. BMC Bioinformatics (2015) doi:10.1186/s12859-014-0439-2
Kleiner Manuel et al., Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes. BMC Genomics (2015) doi:10.1186/s12864-014-1207-4
Mills D James et al., High expression of long intervening non-coding RNA OLMALINC in the human cortical white matter is associated with regulation of oligodendrocyte maturation. Molecular Brain (2015) doi:10.1186/s13041-014-0091-9