Learn to use the Allen Mouse Brain Atlas, from the Allen Brain Institute, a database of spatially mapped large-scale gene expression data from a genome wide survey of expression patterns in the C57BL/6J adult mouse brain. This digital atlas of gene expression includes RNA in situ hybridization data, a Reference Atlas, and tools for visualization of gene expression and display of expression by specific brain structures.
You will learn:
This tutorial is a part of the tutorial group Expression resources. You might find the other tutorials in the group interesting:
Functional Glycomics Gateway: The home for Functional Glycomics research
CleanEx: A Database of Heterogeneous Gene Expression Data Based on A Consistent Gene Nomenclature
miRBase: microRNA sequences, targets and gene nomenclature
DBTSS: Database of Transcriptional Start Sites
Alternative Splicing and Transcript Diversity (ASTD) database: A bioinformatics resource for alternative splice events and transcripts for human, mouse, and rat
GENSAT: Provides an extensive amount of high quality images of gene expression in the central nervous system of the mouse.
Gene Expression Omnibus (GEO): A gene expression/molecular abundance repository and a curated, online resource for gene expression data
ArrayExpress: A public repository for microarray gene expression data at the EBI
Expression : This category may contain various expression data collections, annotation tools, or repositories of expression data.
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Recent BioMed Central research articles citing this resource
Zhu Qianglong et al., Comparative transcriptome analysis of two contrasting watermelon genotypes during fruit development and ripening Transcriptomic methods. BMC Genomics (2017) doi:10.1186/s12864-016-3442-3
Gu Chao et al., Multiple regulatory roles of AP2/ERF transcription factor in angiosperm Molecular Biology. Botanical Studies (2017) doi:10.1186/s40529-016-0159-1
Martin Christine et al., Assessing segmental versus non-segmental features in the ventral nervous system of onychophorans (velvet worms). BMC Evolutionary Biology (2017) doi:10.1186/s12862-016-0853-3
Cai Pengfei et al., A next-generation microarray further reveals stage-enriched gene expression pattern in the blood fluke Schistosoma japonicum. Parasites Vectors (2017) doi:10.1186/s13071-016-1947-x
Huang Yutao et al., Exogenous spermidine improves seed germination of sweet corn via involvement in phytohormone interactions, H 2 O 2 and relevant gene expression. BMC Plant Biology (2017) doi:10.1186/s12870-016-0951-9