Learn to use WormBase, the primary resource for molecular and genetic information on Caenorhabditis elegans and related species. This resource contains not only genomic data but also has information on strains, phenotypes, cell and gene expression, and discussion forums on the C. elegans community. This all-inclusive resource is a critical tool for those using nematodes as a model organism for their research.
Note: The WormBase team has released a new interface, and we will update our materials to reflect this soon. The current material here refers to the legacy site, which remains accessible from http://legacy.wormbase.org/ at this time.
You will learn:
This tutorial is a part of the tutorial group Model organisms. You might find the other tutorials in the group interesting:
TAIR: The Arabidopsis Information Resource
Saccharomyces Genome Database (SGD): Saccharomyces Genome Database
PhenomicDB: Phenotypes database
FlyBase: A resource for the genes, genome and molecular biology of Drosophila melanogaster and related species.
Mouse Genome Informatics (MGI): The Mouse Genome Informatics resource provides data, tools, and analyses for the mouse model organism.
Rat Genome Database (RGD): Rat Genome Database
ZFIN: The Zebrafish Information Network
Gramene: A resource on rice and other grass genomes
Genome Databases (euk) : Genomic databases or repositories primarily aimed at eukaryotic organisms. Some may contain prokaryotic data as well.
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Recent BioMed Central research articles citing this resource
Fukunaga Tsukasa et al., Inactivity periods and postural change speed can explain atypical postural change patterns of Caenorhabditis elegans mutants Imaging, image analysis and data visualization. BMC Bioinformatics (2017) doi:10.1186/s12859-016-1408-8
Vadnal Jonathan et al., Identification of candidate infection genes from the model entomopathogenic nematode Heterorhabditis bacteriophora Multicellular invertebrate genomics. BMC Genomics (2017) doi:10.1186/s12864-016-3468-6
Zhang V. Simo et al., AGOUTI: improving genome assembly and annotation using transcriptome data. GigaScience (2016) doi:10.1186/s13742-016-0136-3
Oliver G. Stephen et al., Model organism databases: essential resources that need the support of both funders and users. BMC Biology (2016) doi:10.1186/s12915-016-0276-z
Gilabert Aude et al., Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option Multicellular invertebrate genomics. BMC Genomics (2016) doi:10.1186/s12864-016-2770-7