Learn to use GVS (Genome Variation Server), a comprehensive database that provides quick access to all data found in both the dbSNP and HapMap databases and includes specialized data from other projects. The database includes a suite of analysis tools such as linkage disequilibrium plots, tag SNPs, merging populations, and more. In addition you can upload our own data and use the GVS analysis and visualization tools. If your research involves genetic variation and SNPs, learn how to use this valuable tool for your analysis needs.
You will learn:
There are no related tutorials.
Variation & Medical : Resources that include information about sequence variation, phenotypes, or medically-relevant conditions.
Obtaining information about SNPs: This question was a while back on BioStar, ways to get information about a list of SNPs. It got me to thinking, what are the various ways to obtain a file of information about a list of SNPs (I'm assu...
Tip of the Week: Genome Variation Tour III: Today's tip is the continuation of researching a single SNP in an individual genome. Trey will use a dbSNP RS ID to find linkage disequilibrium information between a SNP of interest and SNPs in the re...
Personal Genomics, tipping points and a personal perspective: Please indulge a long post from a personal perspective, what genomics is about to do for _me_. This is information that many, if not all, of our readers already know. I've been researching and working...
Personal Genomics, clinical assessment and online resources: The Lancet paper, Clinical assessment incorporating a personal genome, has held my fascination this weekend (yes, I read it at the beach). Mary posted Friday and again Saturday on the paper and related...
Tip of the Week: GVS: This is another tutorial at SciVee (click on image to go to SciVee and watch movie), but this time it's one of mine I did earlier. I'm on vacation (in Germany, were we used to live in Heidelberg while...
Recent BioMed Central research articles citing this resource
Au Hang Chun et al., INDELseek: detection of complex insertions and deletions from next-generation sequencing data Human and rodent genomics. BMC Genomics (2017) doi:10.1186/s12864-016-3449-9
Patel Y. Ronak et al., ClinGen Pathogenicity Calculator: a configurable system for assessing pathogenicity of genetic variants. Genome Medicine (2017) doi:10.1186/s13073-016-0391-z
Samarakoon Saneth Pubudu et al., cnvScan: a CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data Human and rodent genomics. BMC Genomics (2016) doi:10.1186/s12864-016-2374-2
Park Lui Hannah et al., Novel polymorphisms in caspase-8 are associated with breast cancer risk in the California Teachers Study Epidemiology, prevention and public health. BMC Cancer (2016) doi:10.1186/s12885-015-2036-9
Alim Mohammed et al., Family-led rehabilitation after stroke in India: the ATTEND trial, study protocol for a randomized controlled trial. Trials (2016) doi:10.1186/s13063-015-1129-8