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OpenHelix

A database providing rapid access to human genotype data and analysis tools.

Tutorial and training materials by OpenHelix

Learn to use GVS (Genome Variation Server), a comprehensive database that provides quick access to all data found in both the dbSNP and HapMap databases and includes specialized data from other projects. The database includes a suite of analysis tools such as linkage disequilibrium plots, tag SNPs, merging populations, and more. In addition you can upload our own data and use the GVS analysis and visualization tools. If your research involves genetic variation and SNPs, learn how to use this valuable tool for your analysis needs.
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You'll learn:

  • to search for variation by keyword or by sequence
  • to obtain haplotype, linkage disequilibrium and other types of variation data
  • to download specific and targeted data


Related tutorials

This tutorial is a part of the tutorial group UW SNP resources. You might find the other tutorials in the group interesting:

  • SeattleSNPs: Human SNPs in genes
  • NIEHS SNPs: National Institute for Environmental Health Sciences Environmental Genome Project (EGP) SNPs

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Recent BioMed Central research articles citing this resource

Ostrovskaya U Rita et al., Neuroprotective effect of novel cognitive enhancer noopept on AD-related cellular model involves the attenuation of apoptosis and tau hyperphosphorylation. Journal of Biomedical Science (2014) doi:10.1186/s12929-014-0074-2

Cavicchi Catia et al., Sudden unexpected fatal encephalopathy in adults with OTC gene mutations-Clues for early diagnosis and timely treatment. Orphanet Journal of Rare Diseases (2014) doi:10.1186/s13023-014-0105-9

Cunha Luciana et al., Contribution of galvanic vestibular stimulation for the diagnosis of HAM/TSP 16th International Conference on Human Retroviruses: HTLV and Related Viruses 16th International Conference on Human Retroviruses: HTLV and Related Viruses. Retrovirology (2014) doi:10.1186/1742-4690-11-S1-P27

Gottlieb Bruce et al., Changing genetic paradigms: creating next-generation genetic databases as tools to understand the emerging complexities of genotype/phenotype relationships. Human Genomics (2014) doi:10.1186/1479-7364-8-9

Zhao Ying et al., Clinical features and gene mutational spectrum of CDKL5 -related diseases in a cohort of Chinese patients Clinical-Molecular Genetics and Cytogenetics. BMC Medical Genetics (2014) doi:10.1186/1471-2350-15-24

More about the resource:

Genome Variation Server (GVS) is a database hosted by the SeattleSNPs Program for Genomic Applications (PGA), which works to identify, genotype and model the associations between SNPs in candidate genes. GVS is funded as part of the National Heart Lung and Blood Institute's (NHLBI) Programs for Genomic Applications (PGA).


Click here for technical information on using OpenHelix tutorial and training materials

The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.

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