Learn to use GVS (Genome Variation Server), a comprehensive database that provides quick access to all data found in both the dbSNP and HapMap databases and includes specialized data from other projects. The database includes a suite of analysis tools such as linkage disequilibrium plots, tag SNPs, merging populations, and more. In addition you can upload our own data and use the GVS analysis and visualization tools. If your research involves genetic variation and SNPs, learn how to use this valuable tool for your analysis needs.

You will learn:

  • to search for variation by keyword or by sequence
  • to obtain haplotype, linkage disequilibrium and other types of variation data
  • to download specific and targeted data
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TUTORIALS

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CATEGORIES

Variation & Medical : Resources that include information about sequence variation, phenotypes, or medically-relevant conditions.

BLOG POSTS

Obtaining information about SNPs: This question was a while back on BioStar, ways to get information about a list of SNPs. It got me to thinking, what are the various ways to obtain a file of information about a list of SNPs  (I'm assu...

Tip of the Week: Genome Variation Tour III: Today's tip is the continuation of researching a single SNP in an individual genome. Trey will use a dbSNP RS ID to find linkage disequilibrium information between a SNP of interest and SNPs in the re...

Personal Genomics, tipping points and a personal perspective: Please indulge a long post from a personal perspective, what genomics is about to do for _me_. This is information that many, if not all, of our readers already know. I've been researching and working...

Personal Genomics, clinical assessment and online resources: The Lancet paper, Clinical assessment incorporating a personal genome, has held my fascination this weekend (yes, I read it at the beach). Mary posted Friday and again Saturday on the paper and related...

Tip of the Week: GVS: This is another tutorial at SciVee (click on image to go to SciVee and watch movie), but this time it's one of mine I did earlier. I'm on vacation (in Germany, were we used to live in Heidelberg while...

BIOMED CENTRAL

Recent BioMed Central research articles citing this resource

Au Hang Chun et al., INDELseek: detection of complex insertions and deletions from next-generation sequencing data Human and rodent genomics. BMC Genomics (2017) doi:10.1186/s12864-016-3449-9

van der Velde Joeri K. et al., GAVIN: Gene-Aware Variant INterpretation for medical sequencing. Genome Biology (2017) doi:10.1186/s13059-016-1141-7

Patel Y. Ronak et al., ClinGen Pathogenicity Calculator: a configurable system for assessing pathogenicity of genetic variants. Genome Medicine (2017) doi:10.1186/s13073-016-0391-z

Yen L. Jennifer et al., A variant by any name: quantifying annotation discordance across tools and clinical databases. Genome Medicine (2017) doi:10.1186/s13073-016-0396-7

Cruz-Correa Marcia et al., Hereditary cancer syndromes in Latino populations: genetic characterization and surveillance guidelines. Hereditary Cancer in Clinical Practice (2017) doi:10.1186/s13053-017-0063-z