GeneMANIA: Fast Gene Function Predictions
Tutorial and training materials by OpenHelix
| Learn to use GeneMANIA, a free public resource that offers a simple, intuitive web interface that shows the relationships between genes in a list and analyzes and extends the list to include other related genes. Download the example data file used in the tutorial file by clicking here. | Advertisement:
| |||||
You'll learn:
- how to do basic searches and understand result displays
- the importance of selecting the data types and datasets included in analyses
- how changing network weighting can improve your output predictions
- to format your own data and upload it for inclusion in GeneMANIA analyses
- the many advantages of using GeneMANIA
 |  |   |  |
 |
Recent BioMed Central research articles citing this resourceAzuaje J Francisco et al., Predictive integration of gene functional similarity and co-expression defines treatment response of endothelial progenitor cells. BMC Systems Biology (2011) doi:10.1186/1752-0509-5-46 Rouchka C Eric et al., Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011 UT-ORNL-KBRIN Bioinformatics Summit 2011 10 th Annual UT-ORNL-KBRIN Bioinformatics Summit 2011. BMC Bioinformatics (2011) doi:10.1186/1471-2105-12-S7-A1 Schietgat Leander et al., Predicting gene function using hierarchical multi-label decision tree ensembles. BMC Bioinformatics (2010) doi:10.1186/1471-2105-11-2 Jain Shobhit et al., An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology. BMC Bioinformatics (2010) doi:10.1186/1471-2105-11-562 Gillis Jesse et al., A methodology for the analysis of differential coexpression across the human lifespan. BMC Bioinformatics (2009) doi:10.1186/1471-2105-10-306 |
More about the resource:
GeneMANIA was developed, and is maintained by the GeneMANIA team based in the Donnelly Centre for Cellular and Biomedical Research at the University of Toronto.
Click here for technical information on using OpenHelix tutorial and training materials
The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.