Analysis tools for researchers
Tutorial and training materials by OpenHelix
|Learn to use the Galaxy resource from the Galaxy Team at the Center for Comparative Genomics and Bioinformatics at Pennsylvania State University. Galaxy is an excellent online genome analysis tool that combines the power of existing genome annotation databases with a simple web portal with a variety of tools and algorithms, to enable users to search remote resources, combine data from independent queries, prepare, manipulate and analyze the data using a large suite of analysis tools. A history is created for every analysis providing a record ensuring reproducibility of results. Galaxy also presents the opportunity to create and share workflows of analysis.|
- to navigate the basics of the Galaxy interfaces
- how to upload data from various databases and sources
- how to prepare and manipulate your data for further analysis
- how to use Galaxy to perform many different types of analyses on your data
This tutorial is a part of the tutorial group Advanced Analysis. You might find the other tutorials in the group interesting:
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Recent BioMed Central research articles citing this resource
Duressa Dechassa et al., RNA-seq analyses of gene expression in the microsclerotia of Verticillium dahliae Eukaryote microbial genomics. BMC Genomics (2013) doi:10.1186/1471-2164-14-607
Tao Xiang et al., Comparative transcriptome analysis to investigate the high starch accumulation of duckweed ( Landoltia punctata ) under nutrient starvation. Biotechnology for Biofuels (2013) doi:10.1186/1754-6834-6-72
Trinh M Quang et al., Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE Multicellular invertebrate genomics. BMC Genomics (2013) doi:10.1186/1471-2164-14-494
Wei Bin et al., Immune adaptor ADAP in T cells regulates HIV-1 transcription and cell-cell viral spread via different co-receptors. Retrovirology (2013) doi:10.1186/1742-4690-10-101
Smith Steve et al., RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species Non-human and non-rodent vertebrate genomics. BMC Genomics (2013) doi:10.1186/1471-2164-14-375
More about the resource:
Galaxy is developed by the Galaxy Team at the Center for Comparative Genomics and Bioinformatics at Pennsylvania State University and funded by NSF, Penn State and the Huck Institutes of the Life Sciences. The Galaxy analysis tool is publicly available and free to use for all users. Galaxy is designed both for experimental biologists to perform genomic analyses and for developers as an easy-to-use, open-source, scalable framework for tool and data integration.
The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.