Learn to use the Galaxy resource from the Galaxy Teams at various institutions. Galaxy is an excellent online genome analysis tool that combines the power of existing genome annotation databases with a simple web portal with a variety of tools and algorithms, to enable users to search remote resources, combine data from independent queries, prepare, manipulate and analyze the data using a large suite of analysis tools. A history is created for every analysis providing a record ensuring reproducibility of results. Galaxy also presents the opportunity to create and share workflows of analysis.
You will learn:
This tutorial is a part of the tutorial group Advanced Analysis and Queries. You might find the other tutorials in the group interesting:
BioMart: Management and querying of many types of biological data
UniProt: UniProt, Universal Protein Resource
DBTSS: Database of Transcriptional Start Sites
ENCODE Data at UCSC: ENCODE Data at UCSC
Algorithms and Analysis : This category contains various tools that may help perform analysis of different genomics data types. This may include sequence alignment, large-scale or complex queries, motif finding, or comparative assessments.
Video Tip of the Week: Send UCSC Genome Browser sequence to external tools: The folks at the UCSC Genome Browser are always adding new features, new data, and new genomes to their site. And although they use the genome-announce mailing list to get the word out, even I can miss...
Friday SNPpets: This week's SNPpets include a dinoflagellate genome; artificial base pairs in use; the relative joy of entrepreneurship graphed; hidden Galaxy features; free image resources from NIH; new and updated t...
Friday SNPpets: This week's SNPpets include a FlyBook from FlyBase; deep thoughts on the cloud; "Sequence to Medical Phenotypes" software; DNA.land relaunching; reference genomes info; updated feature in ExAC; legal l...
Video Tip of the Week: UCSC Xena System for functional and cancer genomics: When we go out and do workshops, we get a lot of requests from researchers who would like some guidance on cancer genomics tools. Our particular mission has been to aim more broadly at tools that are o...
Friday SNPpets: This week's SNPpets include XKCD for teaching students PSSMs, the 250th eukaryotic genome annotation at NCBI, Galaxy for mobile project checking, missing heritability (not), new dbSNP build, several to...
Recent BioMed Central research articles citing this resource
Kwenda Stanford et al., Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum Prokaryote microbial genomics. BMC Genomics (2016) doi:10.1186/s12864-016-2376-0
McCoy M. Annette et al., Identification and validation of risk loci for osteochondrosis in standardbreds Non-human and non-rodent vertebrate genomics. BMC Genomics (2016) doi:10.1186/s12864-016-2385-z
Hilfert Thomas et al., Low-cost virtual reality environment for engineering and construction. Visualization in Engineering (2016) doi:10.1186/s40327-015-0031-5
Wolfien Markus et al., TRAPLINE: a standardized and automated pipeline for RNA sequencing data analysis, evaluation and annotation Transcriptome analysis. BMC Bioinformatics (2016) doi:10.1186/s12859-015-0873-9
Homan Tobias et al., Spatially variable risk factors for malaria in a geographically heterogeneous landscape, western Kenya: an explorative study. Malaria Journal (2016) doi:10.1186/s12936-015-1044-1