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OpenHelix

Analysis tools for researchers

Tutorial and training materials by OpenHelix

Learn to use the Galaxy resource from the Galaxy Team at the Center for Comparative Genomics and Bioinformatics at Pennsylvania State University. Galaxy is an excellent online genome analysis tool that combines the power of existing genome annotation databases with a simple web portal with a variety of tools and algorithms, to enable users to search remote resources, combine data from independent queries, prepare, manipulate and analyze the data using a large suite of analysis tools. A history is created for every analysis providing a record ensuring reproducibility of results. Galaxy also presents the opportunity to create and share workflows of analysis.
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You'll learn:

  • to navigate the basics of the Galaxy interfaces
  • how to upload data from various databases and sources
  • how to prepare and manipulate your data for further analysis
  • how to use Galaxy to perform many different types of analyses on your data


Related tutorials

This tutorial is a part of the tutorial group Advanced Analysis. You might find the other tutorials in the group interesting:

  • DBTSS: Database of Transcriptional Start Sites

Categories

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Recent BioMed Central research articles citing this resource

Nettling Martin et al., DRUMS: Disk Repository with Update Management and Select option for high throughput sequencing data Knowledge-based analysis. BMC Bioinformatics (2014) doi:10.1186/1471-2105-15-38

Hernández-de-Diego Rafael et al., STATegra EMS: an Experiment Management System for complex next-generation omics experiments Selected articles from the High-Throughput Omics and Data Integration Workshop High-Throughput Omics and Data Integration Workshop. BMC Systems Biology (2014) doi:10.1186/1752-0509-8-S2-S9

Hiltemann Saskia et al., CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy. GigaScience (2014) doi:10.1186/2047-217X-3-1

Vázquez-Castellanos F Jorge et al., Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut Prokaryote microbial genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-37

Rye Morten et al., Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines Human and rodent genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-120

More about the resource:

Galaxy is developed by the Galaxy Team at the Center for Comparative Genomics and Bioinformatics at Pennsylvania State University and funded by NSF, Penn State and the Huck Institutes of the Life Sciences. The Galaxy analysis tool is publicly available and free to use for all users. Galaxy is designed both for experimental biologists to perform genomic analyses and for developers as an easy-to-use, open-source, scalable framework for tool and data integration.


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The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.

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