Tutorial and training materials

Learn to use FlyBase, the primary resource for molecular and genetic information on the Drosophilidae. The essential database for researchers working with the Fruit Fly, FlyBase, provides tools for genetic and proteomic analysis, numerous search tools, sequence data, gene information, and data mining tools. This website, also provides easy access to BLAST, GBrowse, QueryBuilder, TermLink and ImageBrowse. Large Data queries can also be handled with Batch Download options.

You will learn:

  • to perform Quick Searches and navigate gene summary pages
  • to browse genetic features within the context of the entire chromosome
  • to construct complex queries across various sets of data stored within FlyBase
  • to perform nucleotide or amino acid sequence homology searches
TUTORIAL RELATED CONTENT

TUTORIALS

This tutorial is a part of the tutorial group Model organisms. You might find the other tutorials in the group interesting:

TAIR: The Arabidopsis Information Resource

Saccharomyces Genome Database (SGD): Saccharomyces Genome Database

WormBase: molecular and genetic information on Caenorhabditis elegans and related species

PhenomicDB: Phenotypes database

Mouse Genome Informatics (MGI): The Mouse Genome Informatics resource provides data, tools, and analyses for the mouse model organism.

Rat Genome Database (RGD): Rat Genome Database

ZFIN: The Zebrafish Information Network

Gramene: A resource on rice and other grass genomes

CATEGORIES

Genome Databases (euk) : Genomic databases or repositories primarily aimed at eukaryotic organisms. Some may contain prokaryotic data as well.

BLOG POSTS

Tip of the Week: FlyBase: I have a soft spot for Flybase. My Ph.D. work used Drosophila and I've used Drosophila species to teach after that. Something about Dipteran  genetics fascinates me. FlyBase is also one of the older g...

What's the answer? (GMOD tools): BioStar is a site for asking, answering and discussing bioinformatics questions. We are members of thecommunity and find it very useful. Often questions and answers arise at BioStar that are germane to...

Tip of the Week: LAMHDI for animal models: At the Experimental Biology conference last week, we were "booth neighbors" with a group providing a database that we hadn't heard of--LAMHDI. Of course, we love to explore new software that serves ne...

Tip of the Week: YeastMine: For this week's tip I would like to take you over to the Saccharomyces Genome Database (SGD) & from there try out the beta release of YeastMine. YeastMine is based on the InterMine open source data wa...

Tip of the Week: Genomic Data Resources: Today's tip isn't on just one resource or a part of one, it's a whirlwind tour of many! In fact, in less than 5 minutes I'll put you through ALL of the resources online on genomics. Ok, well, not all. ...

BIOMED CENTRAL

Recent BioMed Central research articles citing this resource

Subramanyam Subhashree et al., Hessian fly larval feeding triggers enhanced polyamine levels in susceptible but not resistant wheat. BMC Plant Biology (2015) doi:10.1186/s12870-014-0396-y

Ellisdon M Andrew et al., High resolution structure of cleaved Serpin 42 Da from Drosophila melanogaster Crystallography. BMC Structural Biology (2014) doi:10.1186/1472-6807-14-14

Moreland Travis R et al., A customized Web portal for the genome of the ctenophore Mnemiopsis leidyi Multicellular invertebrate genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-316

Clarke H Thomas et al., Multi-tissue transcriptomics of the black widow spider reveals expansions, co-options, and functional processes of the silk gland gene toolkit Multicellular invertebrate genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-365

Kaiser B Vera et al., De novo transcriptome assembly reveals sex-specific selection acting on evolving neo-sex chromosomes in Drosophila miranda Multicellular invertebrate genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-241