Learn to use FlyBase, the primary resource for molecular and genetic information on the Drosophilidae. The essential database for researchers working with the Fruit Fly, FlyBase, provides tools for genetic and proteomic analysis, numerous search tools, sequence data, gene information, and data mining tools. This website, also provides easy access to BLAST, GBrowse, QueryBuilder, TermLink and ImageBrowse. Large Data queries can also be handled with Batch Download options.
You will learn:
This tutorial is a part of the tutorial group Model organisms. You might find the other tutorials in the group interesting:
TAIR: The Arabidopsis Information Resource
Saccharomyces Genome Database (SGD): Saccharomyces Genome Database
PhenomicDB: Phenotypes database
WormBase: Molecular and genetic information on Caenorhabditis elegans and related species
Mouse Genome Informatics (MGI): The Mouse Genome Informatics resource provides data, tools, and analyses for the mouse model organism.
Rat Genome Database (RGD): Rat Genome Database
ZFIN: The Zebrafish Information Network
Gramene: A resource on rice and other grass genomes
Genome Databases (euk) : Genomic databases or repositories primarily aimed at eukaryotic organisms. Some may contain prokaryotic data as well.
Friday SNPpets: This week's SNPpets include a FlyBook from FlyBase; deep thoughts on the cloud; "Sequence to Medical Phenotypes" software; DNA.land relaunching; reference genomes info; updated feature in ExAC; legal l...
Tip of the Week: FlyBase: I have a soft spot for Flybase. My Ph.D. work used Drosophila and I've used Drosophila species to teach after that. Something about Dipteran genetics fascinates me. FlyBase is also one of the older g...
What's the answer? (GMOD tools): BioStar is a site for asking, answering and discussing bioinformatics questions. We are members of thecommunity and find it very useful. Often questions and answers arise at BioStar that are germane to...
Tip of the Week: LAMHDI for animal models: At the Experimental Biology conference last week, we were "booth neighbors" with a group providing a database that we hadn't heard of--LAMHDI. Of course, we love to explore new software that serves ne...
Tip of the Week: YeastMine: For this week's tip I would like to take you over to the Saccharomyces Genome Database (SGD) & from there try out the beta release of YeastMine. YeastMine is based on the InterMine open source data wa...
Recent BioMed Central research articles citing this resource
You Yanchun et al., Characterization and expression profiling of glutathione S -transferases in the diamondback moth, Plutella xylostella (L.) Multicellular invertebrate genomics. BMC Genomics (2015) doi:10.1186/s12864-015-1343-5
Crisp Alastair et al., Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes. Genome Biology (2015) doi:10.1186/s13059-015-0607-3
Subramanyam Subhashree et al., Hessian fly larval feeding triggers enhanced polyamine levels in susceptible but not resistant wheat. BMC Plant Biology (2015) doi:10.1186/s12870-014-0396-y
Slade D Jennifer et al., Compensatory growth in novel Drosophila Akt1 mutants Developmental Biology. BMC Research Notes (2015) doi:10.1186/s13104-015-1032-0
Svetec Nicolas et al., Evidence that natural selection maintains genetic variation for sleep in Drosophila melanogaster. BMC Evolutionary Biology (2015) doi:10.1186/s12862-015-0316-2