Ensembl Genome Browser
Tutorial and training materials by OpenHelix
|Learn to use the Ensembl Genome Browser main site, which is an extensive database browser for a large variety of species genomes from human to yeast. Ensembl gives the user the ability to browse an annotated graphical display of the genome and associated annotations for specific genomic regions and search the database for detailed information. Ensembl also allows you to compare whole genome alignments and conserved regions across various species. Tools are also provided to BLAST or BLAT against any genome sequence. This tutorial emphasizes versions beyond v51 of the release cycle, which involved major changes to the interface.|
- how to use the browser to see genomic data in context
- about the different views of the data
- to use the sequence search to find desired data
- where to conduct advanced searches of the data
This tutorial is a part of the tutorial group Genome Browsers. You might find the other tutorials in the group interesting:
This tutorial is a part of the tutorial group Ensembl. You might find the other tutorials in the group interesting:
Recent BioMed Central research articles citing this resource
Manconi Andrea et al., A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units Integrated Bio-Search: Selected Works from the 12th International Workshop on Network Tools and Applications in Biology (NETTAB 2012) Integrated Bio-Search: 12th International Workshop on Network Tools and Applications in Biology (NETTAB 2012). BMC Bioinformatics (2014) doi:10.1186/1471-2105-15-S1-S10
Hoeben AW Bianca et al., Systematic analysis of 18 F-FDG PET and metabolism, proliferation and hypoxia markers for classification of head and neck tumors Translational oncology. BMC Cancer (2014) doi:10.1186/1471-2407-14-130
Whelehan J Cormac et al., Characterisation and expression profile of the bovine cathelicidin gene repertoire in mammary tissue Non-human and non-rodent vertebrate genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-128
Höglund K Johanna et al., Validation of associations for female fertility traits in Nordic Holstein, Nordic Red and Jersey dairy cattle Complex traits and quantitative genetics. BMC Genetics (2014) doi:10.1186/1471-2156-15-8
Narunsky Aya et al., ConTemplate: exploiting the protein databank to propose ensemble of conformations of a query protein of known structure Highlights from the Ninth International Society for Computational Biology (ISCB) Student Council Symposium 2013 Ninth International Society for Computational Biology (ISCB) Student Council Symposium 2013. BMC Bioinformatics (2014) doi:10.1186/1471-2105-15-S3-A5
More about the resource:
The Ensembl main site is a joint project of the European Bioinformatics Institute (EBI) and the Sanger Institute, and includes an extensive database of genomic information and annotations of many different species that can be browsed in a graphical browser or viewed with user-generated data for comparison and analysis. Along with the browser the Ensembl resource includes a sequence search mechanism (BlastView), an advanced search tool to download specific or large-scale data (BioMart) and much more. This tool is publicly available.
The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.