Ensembl Genome Browser
Tutorial and training materials by OpenHelix
|Learn to use the Ensembl Genome Browser main site, which is an extensive database browser for a large variety of species genomes from human to yeast. Ensembl gives the user the ability to browse an annotated graphical display of the genome and associated annotations for specific genomic regions and search the database for detailed information. Ensembl also allows you to compare whole genome alignments and conserved regions across various species. Tools are also provided to BLAST or BLAT against any genome sequence. This tutorial emphasizes versions beyond v51 of the release cycle, which involved major changes to the interface.|
- how to use the browser to see genomic data in context
- about the different views of the data
- to use the sequence search to find desired data
- where to conduct advanced searches of the data
This tutorial is a part of the tutorial group Genome Browsers. You might find the other tutorials in the group interesting:
This tutorial is a part of the tutorial group Ensembl. You might find the other tutorials in the group interesting:
Recent BioMed Central research articles citing this resource
Ruiz Daniel et al., Testing a multi-malaria-model ensemble against 30 years of data in the Kenyan highlands. Malaria Journal (2014) doi:10.1186/1475-2875-13-206
Kai Wataru et al., A ddRAD-based genetic map and its integration with the genome assembly of Japanese eel ( Anguilla japonica ) provides insights into genome evolution after the teleost-specific genome duplication Non-human and non-rodent vertebrate genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-233
Karapınar Erdal et al., Generalized α ψ -contractive type mappings of integral type and related fixed point theorems. Journal of Inequalities and Applications (2014) doi:10.1186/1029-242X-2014-160
Narunsky Aya et al., ConTemplate: exploiting the protein databank to propose ensemble of conformations of a query protein of known structure Highlights from the Ninth International Society for Computational Biology (ISCB) Student Council Symposium 2013 Ninth International Society for Computational Biology (ISCB) Student Council Symposium 2013. BMC Bioinformatics (2014) doi:10.1186/1471-2105-15-S3-A5
Kutbi Amin Marwan et al., Some fixed point results for multi-valued mappings in b -metric spaces. Journal of Inequalities and Applications (2014) doi:10.1186/1029-242X-2014-126
More about the resource:
The Ensembl main site is a joint project of the European Bioinformatics Institute (EBI) and the Sanger Institute, and includes an extensive database of genomic information and annotations of many different species that can be browsed in a graphical browser or viewed with user-generated data for comparison and analysis. Along with the browser the Ensembl resource includes a sequence search mechanism (BlastView), an advanced search tool to download specific or large-scale data (BioMart) and much more. This tool is publicly available.
The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.