Additional tools at the UCSC Genome Browser
Tutorial and training materials by OpenHelix
|Learn to use tools associated with the UCSC Genome Browser with this free tutorial, sponsored by UCSC Genome Bioinformatics Group. The UCSC Genome Browser provides other tools beyond genome browsing and querying that may be useful to your research. This third tutorial in the UCSC Genome Browser series explores additional interfaces, access points and visualizations for various data types, all within the framework of the official genome reference sequences from many species.|
- to use the clever Gene Sorter to find relationships among genes
- to perform in silico PCR to identify possible PCR products
- to access ENCODE project data, including pre-publication material
- to find protein data in the Proteome Browser
- to explore image data with the VisiGene Browser
This tutorial is a part of the tutorial group UCSC Tutorials. You might find the other tutorials in the group interesting:
Recent BioMed Central research articles citing this resource
Villano Gianmarco et al., Hepatic progenitor cells express SerpinB3 Cell differentiation and proliferation. BMC Cell Biology (2014) doi:10.1186/1471-2121-15-5
Cui Xiaobin et al., Inactivation of miR-34a by aberrant CpG methylation in Kazakh patients with esophageal carcinoma. Journal of Experimental Clinical Cancer Research (2014) doi:10.1186/1756-9966-33-20
Reid G Jeffrey et al., Launching genomics into the cloud: deployment of Mercury , a next generation sequence analysis pipeline Sequence analysis (methods). BMC Bioinformatics (2014) doi:10.1186/1471-2105-15-30
Londin R Eric et al., The human platelet: strong transcriptome correlations among individuals associate weakly with the platelet proteome Non-coding DNA and RNA. Biology Direct (2014) doi:10.1186/1745-6150-9-3
Durdiaková Jaroslava et al., STX1A and Asperger syndrome: a replication study. Molecular Autism (2014) doi:10.1186/2040-2392-5-14
More about the resource:
The UCSC Genome Browser, sometimes referred to as the "Golden Path" browser, offers a well-organized and user-friendly view of the human genome, and dozens of other genomes as well. The official genomic sequence is supplemented with many other data types which are useful to researchers: expression, variation, comparative genomics, and many more. The data can be accessed with simple text or sequence searches, or probed in depth with customized queries.
The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.