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Various Genome Browsers examined

Tutorial and training materials by OpenHelix

Become aware of genome browser resources with this introductory tutorial. Genome browsers organize tremendous volumes of genome sequence data, adding context to genomic sequence with many types of annotations. Several major genome web browsers are widely used to search, retrieve, and display genome information for human and numerous other species. Here we introduce Ensembl, Map Viewer, UCSC Genome Browser, and the Integrated Microbial Genomes (IMG) browser. We also introduce the GBrowse software system, which is the framework for many additional genome browsers. Biomedical researchers need to be aware of these resources and be able to access the data available within.
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You'll learn:

  • where to find these useful tools
  • an overview of the organization and display features
  • some guidance on how or why to choose a given browser for your research needs


Related tutorials

This tutorial is a part of the tutorial group Genome Browsers. You might find the other tutorials in the group interesting:

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Recent BioMed Central research articles citing this resource

Teaniniuraitemoana Vaihiti et al., Gonad transcriptome analysis of pearl oyster Pinctada margaritifera : identification of potential sex differentiation and sex determining genes Multicellular invertebrate genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-491

Wang Tao et al., dCLIP: a computational approach for comparative CLIP-seq analyses. Genome Biology (2014) doi:10.1186/gb-2014-15-1-r11

Gruel Nadège et al., Polarity gene alterations in pure invasive micropapillary carcinomas of the breast. Breast Cancer Research (2014) doi:10.1186/bcr3653

Yang Hui et al., GAP-Seq: a method for identification of DNA palindromes Human and rodent genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-394

Ruiz Daniel et al., Testing a multi-malaria-model ensemble against 30 years of data in the Kenyan highlands. Malaria Journal (2014) doi:10.1186/1475-2875-13-206

More about the resource:

The Ensembl browser is provided by the Sanger Institute and the EBI. Map Viewer comes to you from the NCBI. UCSC Genome Browser is produced by the Genome Bioinformatics Group at UC Santa Cruz. Integrated Microbial Genome (IMG) is supported by the DOE Joint Genome Institute, US Department of Energy. GBrowse is an open-source software program developed by the Generic Model Organism Database (GMOD) .


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The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.

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