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Various Genome Browsers examined

Tutorial and training materials by OpenHelix

Become aware of genome browser resources with this introductory tutorial. Genome browsers organize tremendous volumes of genome sequence data, adding context to genomic sequence with many types of annotations. Several major genome web browsers are widely used to search, retrieve, and display genome information for human and numerous other species. Here we introduce Ensembl, Map Viewer, UCSC Genome Browser, and the Integrated Microbial Genomes (IMG) browser. We also introduce the GBrowse software system, which is the framework for many additional genome browsers. Biomedical researchers need to be aware of these resources and be able to access the data available within.
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You'll learn:

  • where to find these useful tools
  • an overview of the organization and display features
  • some guidance on how or why to choose a given browser for your research needs


Related tutorials

This tutorial is a part of the tutorial group Genome Browsers. You might find the other tutorials in the group interesting:

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Recent BioMed Central research articles citing this resource

Ruffini Adelchi Pier et al., Targeted DNA vaccines eliciting crossreactive anti-idiotypic antibody responses against human B cell malignancies in mice Immunobiology and immunotherapy section. Journal of Translational Medicine (2014) doi:10.1186/1479-5876-12-207

Gonen Serap et al., Linkage maps of the Atlantic salmon ( Salmo salar ) genome derived from RAD sequencing Non-human and non-rodent vertebrate genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-166

Colonna Vincenza et al., Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences. Genome Biology (2014) doi:10.1186/gb-2014-15-6-r88

ElGokhy M Sherin et al., Ensemble-based classification approach for micro-RNA mining applied on diverse metagenomic sequences. BMC Research Notes (2014) doi:10.1186/1756-0500-7-286

Qu Ling-hui et al., A novel mutation in C5L2 gene was associated with hyperlipidemia and retinitis pigmentosa in a Chinese family. Lipids in Health and Disease (2014) doi:10.1186/1476-511X-13-75

More about the resource:

The Ensembl browser is provided by the Sanger Institute and the EBI. Map Viewer comes to you from the NCBI. UCSC Genome Browser is produced by the Genome Bioinformatics Group at UC Santa Cruz. Integrated Microbial Genome (IMG) is supported by the DOE Joint Genome Institute, US Department of Energy. GBrowse is an open-source software program developed by the Generic Model Organism Database (GMOD) .


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The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
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