Activate license key | Login | Register
OpenHelix

Various Genome Browsers examined

Tutorial and training materials by OpenHelix

Become aware of genome browser resources with this introductory tutorial. Genome browsers organize tremendous volumes of genome sequence data, adding context to genomic sequence with many types of annotations. Several major genome web browsers are widely used to search, retrieve, and display genome information for human and numerous other species. Here we introduce Ensembl, Map Viewer, UCSC Genome Browser, and the Integrated Microbial Genomes (IMG) browser. We also introduce the GBrowse software system, which is the framework for many additional genome browsers. Biomedical researchers need to be aware of these resources and be able to access the data available within.
Advertisement:

You'll learn:

  • where to find these useful tools
  • an overview of the organization and display features
  • some guidance on how or why to choose a given browser for your research needs


Related tutorials

This tutorial is a part of the tutorial group Genome Browsers. You might find the other tutorials in the group interesting:

Categories

View additional tutorials for resources in

Recent BioMed Central research articles citing this resource

Han Fengming et al., Identification, characterization, and utilization of single copy genes in 29 angiosperm genomes Plant genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-504

Moreland Travis R et al., A customized Web portal for the genome of the ctenophore Mnemiopsis leidyi Multicellular invertebrate genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-316

Luo Xin et al., Dynamic reorganization of the AC16 cardiomyocyte transcriptome in response to TNFα signaling revealed by integrated genomic analyses Human and rodent genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-155

von der Heyde Silvia et al., Dynamics of mRNA and polysomal abundance in early 3T3-L1 adipogenesis Transcriptomic methods. BMC Genomics (2014) doi:10.1186/1471-2164-15-381

Gutiérrez Acosta B Olga et al., Acetone utilization by sulfate-reducing bacteria: draft genome sequence of Desulfococcus biacutus and a proteomic survey of acetone-inducible proteins Prokaryote microbial genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-584

More about the resource:

The Ensembl browser is provided by the Sanger Institute and the EBI. Map Viewer comes to you from the NCBI. UCSC Genome Browser is produced by the Genome Bioinformatics Group at UC Santa Cruz. Integrated Microbial Genome (IMG) is supported by the DOE Joint Genome Institute, US Department of Energy. GBrowse is an open-source software program developed by the Generic Model Organism Database (GMOD) .


Click here for technical information on using OpenHelix tutorial and training materials

The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.

design & development: biobyte solutions