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Map Viewer Genome Browser from NCBI

Tutorial and training materials by OpenHelix

Learn to use Map Viewer, a genome browser from the NCBI. Map Viewer organizes and displays dozens of species genomes, and provides additional context with appropriate annotations for the genomic sequences. Many levels of detail are provided for each genome. You have access to the organism homepage, the complete genome view, the map view of a selected region of interest and the sequence view presenting the sequencing data and annotation for a very specific genomic region. Add variation data, easily view homologs in many species, and more. Extensive integration with other NCBI tools enables researchers to link quickly to relevant additional details.
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You'll learn:

  • to perform basic and advanced searches for discovery of information
  • to search a genome with a sequence using BLAST
  • to employ the Maps and Options features to customize your views
  • to utilize additional tools to find clones and jump to chromosomal regions
  • to utilize extensive links to other NCBI resources that may be helpful to your research


Related tutorials

This tutorial is a part of the tutorial group Genome Browsers. You might find the other tutorials in the group interesting:

Categories

View additional tutorials for resources in

  • Genome Databases (eu)
  • NCBI : This category includes all resources maintained at the National Center for Biotechnology Information (NCBI)

Recent BioMed Central research articles citing this resource

Smeets Daniel et al., Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci. Epigenetics Chromatin (2014) doi:10.1186/1756-8935-7-8

Yin Aihua et al., A prenatal missed diagnosed case of submicroscopic chromosomal abnormalities by karyotyping: the clinical utility of array-based CGH in prenatal diagnostics. Molecular Cytogenetics (2014) doi:10.1186/1755-8166-7-26

Christofolini M Denise et al., Complex small supernumerary marker chromosome with a 15q/16p duplication: clinical implications. Molecular Cytogenetics (2014) doi:10.1186/1755-8166-7-29

Romao Moura Josue et al., MicroRNAs in bovine adipogenesis: genomic context, expression and function Non-human and non-rodent vertebrate genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-137

Aya-Bonilla Carlos et al., In silico analyses reveal common cellular pathways affected by loss of heterozygosity (LOH) events in the lymphomagenesis of Non-Hodgkin’s lymphoma (NHL) Human and rodent genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-390

More about the resource:

Map Viewer is one of the numerous tools within the NCBI resources. First developed to organize and display a Drosophila genome in 2000, the Map Viewer has grown to contain dozens of species, including: vertebrates, invertebrates, protozoa, plants, and fungi. Map Viewer has mammalian and model species, but also has an excellent representation of non-mammalian species which can be difficult to find in other browsers. Many data types of maps can be examined, depending on the species.


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