IMG is a powerful community resource for the comparative analysis and annotation of microbial genome data.
Tutorial and training materials by OpenHelix
|The Integrated Microbial Genomes (IMG) comparative genomics system supports timely and comprehensive analysis of genomes across multiple domains of life. The tools available on IMG allow for the analysis of genomes, genes and functions, individually or comparatively from Archaea, bacteria, eukaryotes, viruses and plasmids. Here a researcher can explore organism information, genome statistics and viewers, phylogenetic distributions of genes and horizontally transferred genes. Functional information includes protein domain, orthology, enzyme and pathway information. Genome analyses include abundance profiles, function profiles, genome clustering and more. Analysis carts and MyIMG are additional powerful analysis tools available to aid your research.|
- to find a set of objects (genomes, genes, or functions)
- to analyze profiles of objects (either individually or comparatively)
- to compare genomes using abundance and function profiles and by clustering
- to use other important tools such as IMG analysis carts and MyIMG
- how to view genome project maps and metadata category information
This tutorial is a part of the tutorial group Genome Browsers. You might find the other tutorials in the group interesting:
This tutorial is a part of the tutorial group IMG resources. You might find the other tutorials in the group interesting:
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Recent BioMed Central research articles citing this resource
Wang Yan-Yan et al., Genome characteristics reveal the impact of lichenization on lichen-forming fungus Endocarpon pusillum Hedwig (Verrucariales, Ascomycota) Eukaryote microbial genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-34
Di Lia et al., BorreliaBase : a phylogeny-centered browser of Borrelia genomes Comparative genomics. BMC Bioinformatics (2014) doi:10.1186/1471-2105-15-233
Dürrbaum Milena et al., Unique features of the transcriptional response to model aneuploidy in human cells Human and rodent genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-139
Bai Yu et al., Inference of high resolution HLA types using genome-wide RNA or DNA sequencing reads Transcriptomic methods. BMC Genomics (2014) doi:10.1186/1471-2164-15-325
Qi Xin-Shuai et al., A strong ‘filter’ effect of the East China Sea land bridge for East Asia’s temperate plant species: inferences from molecular phylogeography and ecological niche modelling of Platycrater arguta (Hydrangeaceae) Phylogenetics and phylogeography. BMC Evolutionary Biology (2014) doi:10.1186/1471-2148-14-41
More about the resource:
The Integrated Microbial Genomes (IMG) resource comparative genomics system is a data management platform for analyzing microbial genomes. sequenced by the Joint Genome Institute (JGI) of the US Department of Energy. IMG also integrates data from many other public information resources, such as the European Bioinformatics Institute (EBI), the Swiss Institute of Bioinformatics, the National Center for Biotechnology Information (NCBI), Pfam, and the Kyoto Encyclopedia of Genes and Genomes (KEGG).
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