IMG is a powerful community resource for the comparative analysis and annotation of microbial genome data.
Tutorial and training materials by OpenHelix
|The Integrated Microbial Genomes (IMG) comparative genomics system supports timely and comprehensive analysis of genomes across multiple domains of life. The tools available on IMG allow for the analysis of genomes, genes and functions, individually or comparatively from Archaea, bacteria, eukaryotes, viruses and plasmids. Here a researcher can explore organism information, genome statistics and viewers, phylogenetic distributions of genes and horizontally transferred genes. Functional information includes protein domain, orthology, enzyme and pathway information. Genome analyses include abundance profiles, function profiles, genome clustering and more. Analysis carts and MyIMG are additional powerful analysis tools available to aid your research.|
- to find a set of objects (genomes, genes, or functions)
- to analyze profiles of objects (either individually or comparatively)
- to compare genomes using abundance and function profiles and by clustering
- to use other important tools such as IMG analysis carts and MyIMG
- how to view genome project maps and metadata category information
This tutorial is a part of the tutorial group Genome Browsers. You might find the other tutorials in the group interesting:
This tutorial is a part of the tutorial group IMG resources. You might find the other tutorials in the group interesting:
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Recent BioMed Central research articles citing this resource
Sharma K Parveen et al., Genome features of Pseudomonas putida LS46, a novel polyhydroxyalkanoate producer and its comparison with other P. putida strains. AMB Express (2014) doi:10.1186/s13568-014-0037-8
Levin M Albert et al., Performance of HLA allele prediction methods in African Americans for class II genes HLA-DRB1 DQB1 , and –DPB1 Statistical and computational genetics. BMC Genetics (2014) doi:10.1186/1471-2156-15-72
Choo Woh Siew et al., HelicoBase: a Helicobacter genomic resource and analysis platform Prokaryote microbial genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-600
Béranger Rémi et al., Studying the impact of early life exposures to pesticides on the risk of testicular germ cell tumors during adulthood (TESTIS project): study protocol Epidemiology, prevention and public health. BMC Cancer (2014) doi:10.1186/1471-2407-14-563
Sudhakar Padhmanand et al., Construction and verification of the transcriptional regulatory response network of Streptococcus mutans upon treatment with the biofilm inhibitor carolacton Prokaryote microbial genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-362
More about the resource:
The Integrated Microbial Genomes (IMG) resource comparative genomics system is a data management platform for analyzing microbial genomes. sequenced by the Joint Genome Institute (JGI) of the US Department of Energy. IMG also integrates data from many other public information resources, such as the European Bioinformatics Institute (EBI), the Swiss Institute of Bioinformatics, the National Center for Biotechnology Information (NCBI), Pfam, and the Kyoto Encyclopedia of Genes and Genomes (KEGG).
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