Learn to use the Entrez Gene resource, a gene-centered collection of information from databases maintained by the National Center for Biotechnology Information (NCBI) and from other sources. Genes with defined sequences, known map positions, and genes inferred from phenotypic information are included, and information is added to these records when it becomes available. Entrez Gene records are extensively annotated and linked to provide you with easy access to many types of related information, including literature, taxonomy, conserved domains, GEO Profiles, chemical compound and substance data and more.
You will learn:
This tutorial is a part of the tutorial group Alignment and comparison resources. You might find the other tutorials in the group interesting:
ClustalW2: Performs multiple sequence alignments
BLAST: Basic Local Alignment and Search Tool
FASTA: FASTA sequence algorithm
Primer3: Pick primers from a DNA sequence.
DCODE: DCODE.org Comparative Genomics Developments, a collection of powerful comparative genomics tools
VISTA: Tools for Comparative Genomics
RefSeq: Provides molecular sequence records to help locate gene and protein data.
Nucleotides : Tools that are primarily used in the storage, retrieval, or exploration of nucleotide-based data. Some tools may also involve protein sequence information.
NCBI : This category includes resources maintained at the National Center for Biotechnology Information (NCBI).
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BioGene: iPhone app for NCBI searches from MSKCC team: I can't remember how I got on this email list--but I like it :) Today I was notified that there was a handy iPhone app to quickly get gene info out of the NCBI resources. I wish I had this last week ...
Gene Wiki?: PLoS Biology has an article out today entitled "A Gene Wiki for Community Annotation of Gene Function." The article describes the authors attempts to create a comprehensive gene wiki of gene functions...
Recent BioMed Central research articles citing this resource
Romero Vanessa et al., Structure and evolution of the filaggrin gene repeated region in primates Speciation and evolutionary genetics. BMC Evolutionary Biology (2017) doi:10.1186/s12862-016-0851-5
Yang Chia-Chun et al., Inferring condition-specific targets of human TF-TF complexes using ChIP-seq data Transcriptomic methods. BMC Genomics (2017) doi:10.1186/s12864-016-3450-3
Cumbo Fabio et al., TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas Results and data. BMC Bioinformatics (2017) doi:10.1186/s12859-016-1419-5
Joehanes Roby et al., Integrated genome-wide analysis of expression quantitative trait loci aids interpretation of genomic association studies. Genome Biology (2017) doi:10.1186/s13059-016-1142-6
Yu Hasun et al., Prediction of drugs having opposite effects on disease genes in a directed network. BMC Systems Biology (2016) doi:10.1186/s12918-015-0243-2