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IMG/M provides tools for analyzing the functional capability of microbial communities based on their metagenome sequence

Tutorial and training materials by OpenHelix

The Integrated Microbial Genomes with Microbiome samples (IMG/M) resource is a Data Management & Analysis System which provides tools for analyzing microbial community genomes (metagenomes). IMG/M offers analysis of the functional capability of microbial communities based on their metagenome sequence, in the context of reference isolate genomes included from the Integrated Microbial Genomes (IMG) system. IMG/M also provides tools which allow for genomic comparisons, and examination of the phylogenetic affiliations of genes within the genome.

You'll learn:

  • how to analyze the diversity and abundance of the microbes in a community
  • how to search for genes and navigate the gene details page
  • how to examine the relative abundance of various protein families in a microbial community
  • how to use tools for functional comparisons of genomes
  • how to examine the phylogenetic affiliations of genes within the genome

Related tutorials

This tutorial is a part of the tutorial group IMG resources. You might find the other tutorials in the group interesting:


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Recent BioMed Central research articles citing this resource

Gladden M John et al., Discovery and characterization of ionic liquid-tolerant thermophilic cellulases from a switchgrass-adapted microbial community. Biotechnology for Biofuels (2014) doi:10.1186/1754-6834-7-15

Załuga Joanna et al., Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle Prokaryote microbial genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-392

Sharma K Parveen et al., Genome features of Pseudomonas putida LS46, a novel polyhydroxyalkanoate producer and its comparison with other P. putida strains. AMB Express (2014) doi:10.1186/s13568-014-0037-8

Wu Yu-Wei et al., MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm. Microbiome (2014) doi:10.1186/2049-2618-2-26

Budowle Bruce et al., Validation of high throughput sequencing and microbial forensics applications. Investigative Genetics (2014) doi:10.1186/2041-2223-5-9

More about the resource:

The Integrated Microbial Genomes with Microbiome samples, or IMG/M system, is an extension of the IMG system. It was developed jointly by the Genome Biology and Microbial Ecology Programs at the Joint Genome Institute of the U.S. Department of Energy, and by the Biological Data Management and Technology Center at Lawrence Berkeley National Laboratory. IMG/M currently contains a number of metagenomes and thousands of traditional genomes.

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The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.

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