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OpenHelix

A web-based or downloadable software platform used for visualization and analysis of networks and interaction pathways

Tutorial and training materials by OpenHelix

Learn to use the VisANT resource, a multi-mode software platform used for visualization and analysis of interaction pathways. The VisANT application provides researchers with an easy to use graphical interface for integrating biomolecular interaction data. The metagraph structure allows multi-scale visualization of bio-networks and its integrative data-mining feature permits a large number of functional associations for 103 different species.
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You'll learn:

  • how to search for interactions between genes/proteins
  • how to find and explore integrated KEGG pathway data
  • methods to effectively navigate the interaction network metagraph
  • how to integrate protein expression, orthology, sequence annotation and functional annotation data into the interaction network


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Recent BioMed Central research articles citing this resource

Baier Herbert et al., ISAAC - InterSpecies Analysing Application using Containers Sequence analysis (applications). BMC Bioinformatics (2014) doi:10.1186/1471-2105-15-18

Al Farhan Matuoq Haya et al., Agreement between Orbscan II, VuMAX UBM and Artemis-2 very-high frequency ultrasound scanner for measurement of anterior chamber depth Glaucoma. BMC Ophthalmology (2014) doi:10.1186/1471-2415-14-20

Rapoport Yuna et al., Acute myopia and angle closure glaucoma from topiramate in a seven-year-old: a case report and review of the literature General pediatric medicine and surgery. BMC Pediatrics (2014) doi:10.1186/1471-2431-14-96

Tian Feng et al., Functional characterization of breast cancer using pathway profiles Functional and structural genomics. BMC Medical Genomics (2014) doi:10.1186/1755-8794-7-45

Cheng Hsueh-Chien et al., NetworkViewer: visualizing biochemical reaction networks with embedded rendering of molecular interaction rules Methods, software and technology. BMC Systems Biology (2014) doi:10.1186/1752-0509-8-70

More about the resource:

VisANT is a freely available, Java-based open-source tool. VisANT can be run as a web-based tool, downloaded as a local application or run in batch mode. This resource along with the associated Predictome database, are both supported and maintained by the Center for Advanced Genomic Technology at Boston University.


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The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.

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