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OpenHelix

A web-based or downloadable software platform used for visualization and analysis of networks and interaction pathways

Tutorial and training materials by OpenHelix

Learn to use the VisANT resource, a multi-mode software platform used for visualization and analysis of interaction pathways. The VisANT application provides researchers with an easy to use graphical interface for integrating biomolecular interaction data. The metagraph structure allows multi-scale visualization of bio-networks and its integrative data-mining feature permits a large number of functional associations for 103 different species.
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You'll learn:

  • how to search for interactions between genes/proteins
  • how to find and explore integrated KEGG pathway data
  • methods to effectively navigate the interaction network metagraph
  • how to integrate protein expression, orthology, sequence annotation and functional annotation data into the interaction network


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Recent BioMed Central research articles citing this resource

Baier Herbert et al., ISAAC - InterSpecies Analysing Application using Containers Sequence analysis (applications). BMC Bioinformatics (2014) doi:10.1186/1471-2105-15-18

Al Farhan Matuoq Haya et al., Agreement between Orbscan II, VuMAX UBM and Artemis-2 very-high frequency ultrasound scanner for measurement of anterior chamber depth Glaucoma. BMC Ophthalmology (2014) doi:10.1186/1471-2415-14-20

Al Farhan Matuoq Haya et al., Assessment of central corneal thickness and corneal endothelial morphology using ultrasound pachymetry, non-contact specular microscopy, and Confoscan 4 confocal microscopy Cornea and external eye diseases. BMC Ophthalmology (2013) doi:10.1186/1471-2415-13-73

Bar-Sela M Shai et al., Intermediate term follow-up after a single-piece-acrylic intraocular lens implantation in the ciliary sulcus- a cross-sectional study Cataract and refractive surgery. BMC Ophthalmology (2013) doi:10.1186/1471-2415-13-76

Moulos Panagiotis et al., The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases Networks analysis. BMC Bioinformatics (2013) doi:10.1186/1471-2105-14-235

More about the resource:

VisANT is a freely available, Java-based open-source tool. VisANT can be run as a web-based tool, downloaded as a local application or run in batch mode. This resource along with the associated Predictome database, are both supported and maintained by the Center for Advanced Genomic Technology at Boston University.


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The materials and slides offered can not be resold or used for profit purposes. Reproduction, distribution and/or use is strictly limited to instructional purposes only and can not be used for for monetary gain or wide distribution.
Copyright 2009, OpenHelix, LLC.

design & development: biobyte solutions