OpenHelix tutorials in category Literature and Text Mining

Tools which are related to scientific literature. Repositories, query tools, and mining resources are included.

NameDescriptionResources
Subscription requiredControlled VocabulariesStandardized term lists that can enhance interactions with biological databasesControlled Vocabularies (including Open Biomedical Ontologies)
Subscription requiredGene OntologyGene Ontology controlled vocabularies in biologyGene Ontology (GO)
Subscription requirediHOPInformation Hyperlinked Over Proteins text mining resourceiHOP
Subscription requiredPubMatrixPubMatrix, an on-line tool for multiplex literature mining of the PubMed database. PubMatrix
Subscription requiredPubMedPubMed access to biomedical research literatureNCBI PubMed
Subscription requiredSTRINGknown and predicted protein-protein interactionsSTRING
Subscription requiredTextpressoText-mining the biological literatureTextpresso
Subscription requiredXplorMedeXploring Medline abstractsXplorMed